Real-Time PCR Profiles

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Mouse Opti-XXPress Profiles

  Prevalent  Basic Comprehensive Global SampleType*
Bacteria - Respiratory

Pasteurella pneumotropica
(Jawetz and Heyl biotypes)

 • F, OS, E
Mycoplasma pulmonis    • •  •  F, OS, E
Staphylococcus aureus     •  •  F, OS, E

Streptococcus, β-hemolytic
(Groups A, B, C, G)

    •  •  F, OS, E

Bordetella bronchiseptica

      •  F, OS, E
Bordetella hinzii       •  F, OS, E
Corynebacterium kutscheri       •  F, OS, E
Streptobacillus moniliformis       •  F, OS, E
Streptococcus pneumoniae       •  F, OS, E
CARB       •  F, OS, T, E
Bacteria - Enteric
Helicobacter spp. – H. billis, H. ganmani, H. hepaticus, H. mastomyrinus, H. rodentium, H. typhlonius  •  •  •  F, E
Klebsiella oxytoca    •  •  •  F, E
Klebsiella pneumoniae   F, E
Salmonella spp.    • •  •  F, E
Citrobacter rodentium     •  F, E
Clostridium piliforme     •  •  F, E
Pseudomonas aeruginosa     F, E
Campylobacter spp.       F, E
Proteus mirabillis       F, E
Bacteria - Skin
Corynebacterium bovis       •  FS, F, OS, E
Staphylococcus xylosus       FS, F, OS, E
Fungi  
Pneumocystis spp.       L, E
Viruses  
MHV F, E
MVM F, E
MPV (1-5) F, E
MNV F, E
TMEV F, E
MRV/EDIM F, E
MAV1, MAV2     F, E
Reo virus 1, 2 and 3       F, E
PVM       F, E
Sendai virus       F, E
Ectromelia       F, E
Hantann virus       F, E
Lymphocytic choriomeningitis virus       F, E
Parasites   
Pinworm – Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera F, E
Fur Mite – Myocoptes, Myobia and Radfordia spp. FS,E
Spironucleus muris  • F, E
Entamoeba muris  •  • F, E
Tritrichomonas muris     F, E
Cryptosporidium spp.       F, E
Giardia spp.       F, E

A 5% discount is applied to each submission with 5-9 samples
A 10% discount is applied to each submission with 10 or more samples

 Legend: F – Feces      FS – Fur swab      OS – Oral swab       L – Lung       T- Trachea       E- Environmental           

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Rat Opti-XXPress Profiles

  Prevalent Basic Comprehensive  Global Sample Type*
Bacteria - Respiratory

Pasteurella pneumotropica (Jawetz and Heyl biotypes)

 • F, OS, E
Mycoplasma pulmonis    • •  •  F, OS, E
Staphylococcus aureus     •  •  F, OS, E

Streptococcus, β-hemolytic (Groups A, B, C, G)

    •  •  F, OS, E
Bordetella bronchiseptica       •  F, OS, E
Corynebacterium kutscheri       •   F, OS, E
Streptobacillus moniliformis       •  F, OS, T, E
Streptococcus pneumoniae       •  F, OS, E
CARB       •  F, OS, T, E
Bacteria - Enteric
Helicobacter spp. – H. billis, H. ganmani, H. hepaticus, H. mastomyrinus, H. rodentium, H. typhlonius  • •  •  •  F, E
Klebsiella oxytoca    • •  •  F, E
Klebsiella pneumoniae    • •  F, E 
Salmonella spp.   F, E
Clostridium piliforme     •  •  F, E
Pseudomonas aeruginosa     •  •  F, E
Campylobacter spp.       F, E
Proteus mirabillis       F, E
Bacteria - Skin
Staphylococcus xylosus       •  FS, F, OS, E
Fungi
Pneumocystis spp.       L, E
Viruses
RCV/SDAV  •  •  •  • F, E
RPV  •  •  •  • F, E
KRV  •  •  •  • F, E
H-1  •  •  •  • F, E
RMV F, E
RTV  •  •  •  • F, E
BCV      •  • F, E
MAV1, MAV2      •  • F, E
Reo virus 1, 2 and 3       F, E
PVM       F, E
Sendai virus       F, E
Seoul virus       F, E
Parasites
Pinworm – Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera F, E
Fur Mite – Myocoptes, Myobia and Radfordia spp. FS, E
Spironucleus muris  • F, E
Entamoeba muris  •  • F, E
Tritrichomonas muris     F, E
Cryptosporidium spp.       F, E
Giardia spp.       F, E

A 5% discount is applied to each submission with 5-9 samples
A 10% discount is applied to each submission with 10 or more samples

Legend: F – Feces      FS – Fur swab      OS – Oral swab       L – Lung       T- Trachea       E- Environmental  

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PCR Parvovirus Panels

Mouse Parvovirus
MVM, MPV (MPV 1-5)
Rat Parvovirus
KRV, RMV, H-1, RPV

Pinworm, Furmite and Protozoal PCR Profile

 
Fur Mite PCR Profile

Myocoptes
• Myobia
• Radfordia

Detection of mites through the traditional method of visual inspection is challenging, especially when the infestation is mild and low numbers of mites are present. Yet failure to detect mites during quarantine can jeopardize the health status of the entire animal facility.

IDEXX BioResearch scientists have developed a Mite PCR Assay that detects all known mouse and rat mite species and has greater sensitivity than visual inspection of pelts. IDEXX BioResearch's Fur Mite PCR Assay is available as an individual test as well as as part of Radil Advantage Program, Opti-XXpress, and Opti-Fecal panels

Pinworm PCR Profile for Mice 
Syphacia obvelata
• Syphacia muris

• Aspiculuris tetraptera

Pinworm PCR Profile for Rats
Syphacia muris
• Syphacia obvelata
• Aspiculuris tetraptera

Pinworms and Fur Mites PCR Profile
For mice or rats
Includes species of pinworms and fur mites listed above. 

Protozoal PCR Profile
• Entamoeba muris
• Giardia muris
• Spironucleus muris
• Tritrichomonas muris

 

A 5% discount is applied to each submission with 5-9 samples
A 10% discount is applied to each submission with 10 or more samples

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Mouse Fecal Profiles

  Fecal A Fecal B Fecal C
Bacteria - Respiratory
Helicobacter spp.–H. bilis, H. ganmani, H. hepaticus, H. mastomyrinus, H. rodentium, H. typhlonius
Citrobacter rodentium    
Clostridium piliforme    
Klebsiella oxytoca    
Klebsiella pneumoniae    
Pseudomonas aeruginosa    
Salmonella enterica    
Viruses
MHV
MVM
MPV (MPV1-5)
MNV
TMEV  
EDIM  
MAV1    
MAV2    
Protozoa
Entamoeba muris    
Giardia muris    
Spironucleus muris    
Tritrichomonas muris    
Parasites      
Pinworm (Syphacia obvelata, Syphacia muris, Aspiculuris tetraptera)  •  •  •

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Rat Fecal Profiles

  Fecal Profile
Helicobacter spp.–H. bilis, H. ganmani, H. hepaticus, H. mastomyrinus, H. rodentium, H. typhlonius
RPV
KRV
RMV
H-1
RTV
Pinworm-Syphacia muris, Syphacia obvelata, Aspiculuris tetraplera

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Individual PCR Assays and Prefered Specimen Type


  Sample Type
Astrovirus  
     Murine astrovirus Feces
Adenovirus  
    Guinea pig adenovirus Oral swab, lung
    Mouse adenovirus 1 (MAV1) Feces, lung
    Mouse adenovirus 2 (MAV2) Feces, intestine
Boone cardiovirus Feces
Coronavirus
    Mouse hepatitis virus (MHV) Feces, mesenteric lymph node
    Rat coronavirus (RCV)/Sialodacryoadenitis virus (SDAV) Oral swab, feces, hardarian gland
Cytomegalovirus Oral swab, feces, spleen, salivary gland
    Guinea pig cytomegalovirus (GPCMV)  
    Mouse cytomegalovirus 1 (mCMV1)  
    Mouse cytomegalovirus 2 (mCMV2)  
    Rat cytomegalovirus1 (rCMV1)  
    Rat cytomegalovirus2 (rCMV2)  
Ectromelia virus (mouse poxvirus) Feces, skin lesion
Hamster parvovirus (HaPV) Feces, mesenteric lymph node
Hantavirus
    Hantaan Feces, kidney
    Seoul virus Feces, kidney
    Sin Nombre Feces, kidney
K virus Feces, mesenteric lymph node
Lactate dehydrogenase-elevating virus (LDEV) Serum, spleen
Lymphocytic choriomeningitis virus (LCMV) Feces, kidney
Mouse thymic virus (MTV) Oral swab, feces, salivary gland
Murine norovirus (MNV) Feces
Parvovirus spp. Feces, mesenteric lymph node, spleen
    Toolan's H-1 virus (H-1)  
    Kilhams's rat virus (KRV)  
    Mouse parvovirus (MPV)  
    Minute virus of mice (MVM)  
    Rat minute virus (RMV)  
    Rat parvovirus (RPV)  
Pneumonia virus of mice (PVM) Oral swab, feces, lung
Polyoma virus Feces, skin
Rat polyomavirus 2 Feces
Rat theilovirus (RTV) Feces, intestine
Respiratory enteric orphan virus 1, 2 and 3 (REO1, 2 and 3) Feces, intestine
Rotavirus
    Mouse rotavirus (EDIM) Feces
    Rat rotavirus (IDIR) Feces
Sendai virus Oral swab, feces
Theiler's murine encephalomyelitis virus Feces
Bacteria
Bordetella bronchiseptica Feces, oral swab, trachea
Bordetella hinzii Feces, oral swab, trachea
Campylobacter coli Feces
Campylobacter jejuni Feces
Cilia-associated respiratory bacillus (CAR bacillus) Oral swab, feces, trachea
Citrobacter rodentium Feces, colon
Clostridium difficile Toxin A Feces
Clostridium difficile Toxin B Feces
Clostridium perfringes Alpha Toxin Feces
Clostridium piliforme (Tyzzer's disease) Feces
Corynebacterium bovis Skin swab, feces
Corynebacterium kutscheri Oral swab, feces
Cryptosporidium spp. Feces
Helicobacter spp. Feces
    Helicobacter bilis  
    Helicobacter ganmani  
    Helicobacter hepaticus  
    Helicobacter mastomyrinus  
    Helicobacter rodentium  
    Helicobacter typhlonius  
Klebsiella oxytoca Feces
Klebsiella pneumoniae Feces
Lawsonia intracellularis Feces
Mycoplasma pulmonis Oral swab, feces
Pasteurella multocida Oral swab, feces
Pasteurella pneumotropica (biotype Heyl and Jawetz) Oral swab, feces
Proteus spp. Feces
Proteus mirabilis Feces
Pseudomonas aeruginosa Feces
Salmonella spp. Feces
Segmented filamentous bacteria Feces
Staphylococcus aureus Skin swab, oral swab, feces
Staphylococcus xylosus Skin swab, oral swab, feces
Streptobacillus moniliformis Oral swab, feces
Streptococcus, β-hemolytic Oral swab, feces
    Streptococcus pyogenes  
    Streptococcus agalactiae  
    Streptococcus equi subs. Zooepidemicus  
    Streptococcus canis  
Streptococcus pneumoniae Oral swab, feces
Treponema paraluiscuniculi Genital swab
Fungi
Pheumocystis spp. Lung, feces, oral swab
Parasites
Endoparasites  
Pinworm spp. Feces
    Aspiculuris tetraptera  
    Syphacia muris  
    Syphacia obvelata  
Rodentilepis nana Feces
Hymenolepis diminuta Feces
Eimeria spp. Feces
Encephalitozoon cuniculi Feces, kidney
Entamoeba muris Feces
Giardia muris Feces
Giardia spp. Feces
Spironucleus muris Feces
Tritrichomonas muris Feces
Ectoparasites  
Fur mite  
    Myocoptes musculinus Skin Swab
    Radfordia affinis/Radfordia ensiphora/Myobia musculi Skin swab, cage swab
Demodex musculi Skin swab
Ornithonyssus spp. Skin swab, cage swab
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